PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G215100.2.p
Common NameSb10g026150, SORBIDRAFT_10g026150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 475aa    MW: 50875.8 Da    PI: 6.3249
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G215100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16.1e-15134193155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sobic.010G215100.2.p 134 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 193
                           57*******************666664477446*************************98 PP

2AP247.44.8e-15236287155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sobic.010G215100.2.p 236 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 287
                           57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.94E-21134203No hitNo description
SuperFamilySSF541712.09E-17134203IPR016177DNA-binding domain
PfamPF008475.9E-12134193IPR001471AP2/ERF domain
SMARTSM003807.1E-29135207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-16135202IPR001471AP2/ERF domain
PROSITE profilePS5103219.124135201IPR001471AP2/ERF domain
PRINTSPR003671.9E-6136147IPR001471AP2/ERF domain
CDDcd000182.01E-23236297No hitNo description
SuperFamilySSF541716.34E-18236297IPR016177DNA-binding domain
PfamPF008475.9E-10236287IPR001471AP2/ERF domain
SMARTSM003801.5E-33237301IPR001471AP2/ERF domain
PROSITE profilePS5103219.045237295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18237296IPR001471AP2/ERF domain
PRINTSPR003671.9E-6277297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAF SNSSSAAPLG DEQGTVEESP KMVEDFLGGV  60
GGAGAPPAAA TAAEDHQLVC GELGSITAGF LRHYPAPGTT VENPGAVTVA AMSTDVAESD  120
QARRPAETFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEEKA  180
ARAYDLAALK YWGATTTTNF PVSNYEKELE EMKSMTRQEF IASLRRKSSG FSRGASIYRG  240
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD  300
VDSILNSDLP VGGGAAGRAS KFPLDSLQPG SAAAMIAGAA SQAMPPSEKD YWSLLALHYQ  360
QQQQQQQFPA SAYEAYGSGV NVDFTMGTSS HSSSNTGSGV MWGTTTGAMG QQDSSSSKQG  420
NGYASNIPYA AAAAAMVSGS AGYEGSTGNN GTWVTSSTST STAPQYYNYL FGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.170230.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400030.0BT040003.1 Zea mays full-length cDNA clone ZM_BFc0057O19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437394.10.0hypothetical protein SORBIDRAFT_10g026150
SwissprotQ6PQQ31e-129AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLC5Z7850.0C5Z785_SORBI; Putative uncharacterized protein Sb10g026150
STRINGSb10g026150.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-123AINTEGUMENTA-like 5